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Load fjord PAR data from a NetCDF file downloaded by FjordLight
.
fl_LoadFjord.Rd
This functions will load into the R environment the data within one NetCDF
file that has been downloaded via fl_DownloadFjord
.
Arguments
- fjord
Expects a character vector for one of the 8 available fjords. See
fl_ListFjords
for the list of possible choices.- layer
The layer of data the user wants to load. The default "PAR_B" will load monthly bottom PAR data. The other options, "K_PAR" will load monthly values for the light extinction coefficient (i.e. K_PAR) in the water column, "ClimSD" will load the standard deviation values for the monthly climatologies, and "YearlySD" will load the standard deviation values for the yearly climatologies. Note that only the PAR_B files and do not contain all global values and metadata. The other files are in supplement to the PAR_B files.
- dirdata
The directory where the user would like to load the data from.
- TS
The default,
FALSE
, will prevent this function from loading the monthly bottom PAR values. Instead it will load all global, annual, and monthly climatology data. SetTS = TRUE
to load all data, but note that these may be extremely large.- verbose
TRUE
orFALSE
(default) to provide a more verbose output of the data loading process.
Value
Data are loaded in as a complex list format. Containing most of the data fields
described in the documentation for fl_DownloadFjord
.
Examples
# Choose fjord
fjord_code <- "test"
# Load global, annual, and monthly climatologies
fjorddata <- fl_LoadFjord(fjord_code, dirdata = system.file("extdata", package = "FjordLight"))
# Load ALL data
fjorddata_full <- fl_LoadFjord(fjord_code,
dirdata = system.file("extdata", package = "FjordLight"), TS = TRUE)